Documents

EnzymeML is formally defined in the Specifications documents below. Additionally, we provide a helpful explanation on Use cases, which describe how to use the Application Programming Interface (API). Software and Databases Guide, and Publications are also found below.

We are in the process of developing an installation toolkit for EnzymeML. This page will provide this information in the future.

Specifications

The EnzymeML specifications define the syntax and semantics of EnzymeML. These documents are the definitive references…

Application Programming Interface

An application programming interface (API) which consists of two libraries, the Python library PyEnzyme, and the Java…

Use cases

To illustrate the power of EnzymeML, we illustrate selected applications for experimental enzymologists, system biology…

Software and Databases Guide

The EnzymeML Software and Database Guide provides a summary of all EnzymeML-compatible software systems and databases…

Publications

This section lists preprints and published work describing EnzymeML and core EnzymeML-supporting software tools.…